Open-source tools, pipelines, and frameworks for computational biology and bioinformatics research
Jumpstart your reproducible research with our ready-to-use project template
A ready-to-use project template with pre-configured environments, standardized directory structure, and example workflows to jumpstart your reproducible research projects.
Open-source tools and frameworks developed for computational biology research
A comprehensive Python framework for single-cell RNA-Seq data analysis including preprocessing, clustering, differential expression, and trajectory analysis.
A comprehensive toolkit for metagenomics data analysis including taxonomic profiling, functional annotation, and diversity analysis.
A comprehensive pipeline for mass spectrometry-based proteomics data analysis including identification, quantification, and statistical analysis.
A robust Snakemake pipeline for germline and somatic variant calling from whole-genome and whole-exome sequencing data.
A complete Snakemake pipeline for RNA-Seq data analysis from raw FASTQ files to differential expression results with MultiQC reporting.