Tutorials

Step-by-step guides for bioinformatics, computational pipelines, and data science in biotechnology

Who is this for?

Lab scientists transitioning to computational work
Graduate students and postdocs in life sciences
Research groups wanting to standardize workflows

What you'll get

Copy-paste solutions you can use immediately
Reproducible workflows that scale with your research
Skills valued in both academia and industry

Ready to Build Your Own Pipeline?

Use our battle-tested template to jumpstart your reproducible research workflows. Pre-configured environments, standardized structure, and example workflows included.

Use This Template View on GitHub

bioinformatics advanced

RNA-Seq Analysis Pipeline with Bash

Build a comprehensive bash pipeline for RNA-Seq data analysis from raw reads to differential expression results using STAR, featureCounts, and DESeq2.

#bash #rna-seq #star

bash star samtools subread

February 5, 2025 25 min read

bioinformatics advanced

Variant Calling Pipeline with Bash

Build a comprehensive bash pipeline for variant calling from raw sequencing data to annotated VCF files using GATK and bcftools.

#bash #variant-calling #gatk

bash bwa samtools gatk

January 30, 2025 22 min read

pipelines intermediate

Bioinformatics Bash Pipeline Framework

Learn to build a flexible and reusable bash pipeline framework for bioinformatics workflows with error handling, logging, and parallel processing.

#bash #pipeline-framework #bioinformatics

bash make gnu-parallel sed

January 25, 2025 18 min read

bioinformatics advanced

Protein Annotation Pipeline with Bash

Build a comprehensive bash pipeline for protein sequence annotation including functional prediction, domain identification, and structural analysis.

#bash #protein-annotation #blast

bash blast interproscan hmmer

January 20, 2025 20 min read

bioinformatics intermediate

Genome Extraction Pipeline with Bash

Learn to build a robust bash pipeline for extracting and preparing genomic data from raw sequencing files to analysis-ready assemblies.

#bash #genome-extraction #assembly

bash seqtk spades quast

January 15, 2025 15 min read